Taxonomy-based retrieval of documents

ORGANISMS is a weekly updated web resource that facilitates taxonomy-aware search and retrieval of articles. To this end, the the resource performs named entity recognition of terms from the NCBI Taxonomy on PubMed abstracts. The resource further provides download files of organism-disease and organism-tissue associations extracted through automatic text mining.

For further details please refer to the following Open Access article about the database:

The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text